6IEC Structural Protein Immune System date Sep 13, 2018
title Structure Of Rvfv Gn And Human Monoclonal Antibody R17
authors Q.H.Wang, Y.Wu, F.Gao, J.X.Qi, G.F.Gao
compound source
Molecule: Nsmgngc
Chain: A, B, E, I
Synonym: Glycoprotein N,Gn
Engineered: Yes
Organism_scientific: Rift Valley Fever Virus
Organism_common: Rvfv
Organism_taxid: 11588
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: R17 H Chain
Chain: H, C, F, J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: R17 L Chain
Chain: L, D, G, K
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 62
R_factor 0.241 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
198.009 198.009 164.467 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, I, E, B


Primary referenceNeutralization mechanism of human monoclonal antibodies against Rift Valley fever virus., Wang Q, Ma T, Wu Y, Chen Z, Zeng H, Tong Z, Gao F, Qi J, Zhao Z, Chai Y, Yang H, Wong G, Bi Y, Wu L, Shi R, Yang M, Song J, Jiang H, An Z, Wang J, Yilma TD, Shi Y, Liu WJ, Liang M, Qin C, Gao GF, Yan J, Nat Microbiol. 2019 Apr 1. pii: 10.1038/s41564-019-0411-z. doi:, 10.1038/s41564-019-0411-z. PMID:30936489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (678 Kb) [Save to disk]
  • Biological Unit Coordinates (6iec.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (6iec.pdb2.gz) 172 Kb
  • Biological Unit Coordinates (6iec.pdb3.gz) 172 Kb
  • Biological Unit Coordinates (6iec.pdb4.gz) 173 Kb
  • CSU: Contacts of Structural Units for 6IEC
  • Structure Factors (1558 Kb)
  • Retrieve 6IEC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IEC from S2C, [Save to disk]
  • View 6IEC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IEC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6iec_D] [6iec_B] [6iec_A] [6iec_J] [6iec_H] [6iec_K] [6iec_I] [6iec_G] [6iec_C] [6iec_E] [6iec_F] [6iec_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IEC
  • Community annotation for 6IEC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science