6IEH Rna Binding Protein date Sep 14, 2018
title Crystal Structures Of The Hmtr4-Nrde2 Complex
authors J.Y.Chen, C.H.Yun
compound source
Molecule: Exosome Rna Helicase Mtr4
Chain: B
Synonym: Atp-Dependent Rna Helicase Dob1,Atp-Dependent Rna Skiv2l2,Superkiller Viralicidic Activity 2-Like 2,Tramp-Lik Helicase;
Ec: 3.6.4.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtrex, Dob1, Kiaa0052, Mtr4, Skiv2l2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Protein Nrde2 Homolog
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrde2, C14orf102
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.305 113.728 80.717 90.00 96.49 90.00
method X-Ray Diffractionresolution 2.89 Å
ligand
enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B

  • catalytic step 2 spliceosome...
  • Primary referenceNRDE2 negatively regulates exosome functions by inhibiting MTR4 recruitment and exosome interaction., Wang J, Chen J, Wu G, Zhang H, Du X, Chen S, Zhang L, Wang K, Fan J, Gao S, Wu X, Zhang S, Kuai B, Zhao P, Chi B, Wang L, Li G, Wong CCL, Zhou Y, Li J, Yun C, Cheng H, Genes Dev. 2019 Mar 6. pii: gad.322602.118. doi: 10.1101/gad.322602.118. PMID:30842217
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (6ieh.pdb1.gz) 155 Kb
  • CSU: Contacts of Structural Units for 6IEH
  • Structure Factors (313 Kb)
  • Retrieve 6IEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IEH from S2C, [Save to disk]
  • View 6IEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IEH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ieh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ieh_A] [6ieh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IEH
  • Community annotation for 6IEH at PDBWiki (http://pdbwiki.org)

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