6IEO Membrane Protein date Sep 14, 2018
title Crystal Structure Of Mycobacterium Tuberculosis Htra1 (Rv122 Regulated Conformation
authors A.K.Gupta, B.Gopal
compound source
Molecule: Probable Serine Protease Htra (Degp Protein)
Chain: A
Synonym: Degq Like Protein
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Gene: Htra, Rv1223
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.191 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.114 107.114 61.529 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.83 Å
ligand PMS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of Mycobacterium tuberculosis high-temperature requirement A protein reveals an autoregulatory mechanism., Gupta AK, Behera D, Gopal B, Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):803-809. doi:, 10.1107/S2053230X18016217. Epub 2018 Nov 29. PMID:30511675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (6ieo.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 6IEO
  • CSU: Contacts of Structural Units for 6IEO
  • Structure Factors (373 Kb)
  • Retrieve 6IEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IEO from S2C, [Save to disk]
  • View 6IEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IEO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ieo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IEO
  • Community annotation for 6IEO at PDBWiki (http://pdbwiki.org)

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