6IGM Transcription date Sep 25, 2018
title Cryo-Em Structure Of Human Srcap Complex
authors Y.Feng, Y.Tian, Z.Wu, Y.Xu
compound source
Molecule: Ruvb-Like 1
Chain: A, C, E
Synonym: 49 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,54 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit H,Nuclear Matrix Protein 238,Nmp 238, Tip49a,Tip60-Associated Protein 54-Alpha,Tap54-Alpha;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ruvbl1, Ino80h, Nmp238, Tip49, Tip49a
Expression_system: Mammal Environmental Sample
Expression_system_taxid: 1092587

Molecule: Ruvb-Like 2
Chain: B, D, F
Synonym: 48 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,51 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit J,Repressing Pontin 52,Reptin 52,Tip4 Associated Protein 54-Beta,Tap54-Beta;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ruvbl2, Ino80j, Tip48, Tip49b, Cgi-46
Expression_system: Mammal Environmental Sample
Expression_system_taxid: 1092587

Molecule: Actin-Related Protein 6
Chain: G
Synonym: Harp6,Harpx
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actr6, Cda12
Expression_system: Mammal Environmental Sample
Expression_system_taxid: 1092587

Molecule: Helicase Srcap
Chain: H
Synonym: Domino Homolog 2,Snf2-Related Cbp Activator
Ec: 3.6.4.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Srcap, Kiaa0309
Expression_system: Mammal Environmental Sample
Expression_system_taxid: 1092587

Molecule: Unknown Subunit
Chain: X
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Mammal Environmental Sample
Expression_system_taxid: 1092587
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand
enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C
  • DNA helicase activity
  • transcription coactivator ac...
  • 5'-3' DNA helicase activity


  • F, B, D
  • DNA helicase activity
  • transcription corepressor ac...
  • 5'-3' DNA helicase activity


  • G


    H
  • transcription coactivator ac...
  • histone acetyltransferase ac...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk]
  • Biological Unit Coordinates (6igm.pdb1.gz) 441 Kb
  • CSU: Contacts of Structural Units for 6IGM
  • Retrieve 6IGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IGM from S2C, [Save to disk]
  • View 6IGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IGM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6igm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6igm_F] [6igm_A] [6igm_H] [6igm_B] [6igm_D] [6igm_G] [6igm_E] [6igm_C] [6igm_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IGM
  • Community annotation for 6IGM at PDBWiki (http://pdbwiki.org)

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