6IIS Dna Binding Protein Dna date Oct 07, 2018
title Complex Structure Of The Hrp3 Pwwp Domain With Both A 16-Bp Dna And An H3k36me3-Containing Histone Peptide
authors Z.Wang, W.Tian
compound source
Molecule: Hepatoma-Derived Growth Factor-Related Protein 3
Chain: A, B
Synonym: Hrp-3,Hepatoma-Derived Growth Factor 2,Hdgf-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdgfl3, Hdgf2, Hdgfrp3, Cgi-142
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: 16-Bp Ta-Rich Dna
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: H3k36me3 Peptide
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 31
R_factor 0.186 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.473 33.473 198.774 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.36 Å
ligand M3L enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (6iis.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6IIS
  • CSU: Contacts of Structural Units for 6IIS
  • Structure Factors (138 Kb)
  • Retrieve 6IIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IIS from S2C, [Save to disk]
  • View 6IIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IIS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6iis_A] [6iis_B] [6iis_D] [6iis_F] [6iis_E] [6iis_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IIS
  • Community annotation for 6IIS at PDBWiki (http://pdbwiki.org)

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