6IIT Dna Binding Protein Dna date Oct 07, 2018
title Complex Structure Of The Hrp3 Pwwp Domain With Both A 16-Bp Dna And An H3k36me2-Containing Histone Peptide
authors Z.Wang, W.Tian
compound source
Molecule: Hepatoma-Derived Growth Factor-Related Protein 3
Chain: A, B
Synonym: Hrp-3,Hepatoma-Derived Growth Factor 2,Hdgf-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdgfl3, Hdgf2, Hdgfrp3, Cgi-142
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: 16-Bp Ta-Rich Dna
Chain: C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: H3k36me2-Containing Histone Peptide
Chain: E, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31
R_factor 0.191 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.592 33.592 200.101 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand MLY enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6iit.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 6IIT
  • CSU: Contacts of Structural Units for 6IIT
  • Structure Factors (200 Kb)
  • Retrieve 6IIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IIT from S2C, [Save to disk]
    • View 6IIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6IIT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6iit_D] [6iit_B] [6iit_E] [6iit_F] [6iit_C] [6iit_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6IIT
  • Community annotation for 6IIT at PDBWiki (http://pdbwiki.org)

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