6ILK Virus date Oct 18, 2018
title Cryo-Em Structure Of Echovirus 6 Complexed With Its Attachme Receptor Cd55 At Ph 7.4
authors G.F.Gao, S.Liu, X.Zhao, R.Peng
compound source
Molecule: Capsid Protein Vp1
Chain: A
Synonym: Virion Protein 1
 Organism_scientific: Echovirus E6
Organism_taxid: 12062

Molecule: Capsid Protein Vp2
Chain: B
Synonym: Virion Protein 2
Organism_scientific: Echovirus E6
Organism_taxid: 12062

Molecule: Capsid Protein Vp3
Chain: C
Synonym: Virion Protein 3
Organism_scientific: Echovirus E6
Organism_taxid: 12062

Molecule: Capsid Protein Vp4
Chain: D
Synonym: Virion Protein 4
Organism_scientific: Echovirus E6
Organism_taxid: 12062

Molecule: Complement Decay-Accelerating Factor
Chain: E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd55
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: 293t
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand SPH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


D


Primary referenceHuman Neonatal Fc Receptor Is the Cellular Uncoating Receptor for Enterovirus B., Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF, Cell. 2019 May 30;177(6):1553-1565.e16. doi: 10.1016/j.cell.2019.04.035. Epub, 2019 May 16. PMID:31104841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (6ilk.pdb1.gz) 8631 Kb
  • LPC: Ligand-Protein Contacts for 6ILK
  • CSU: Contacts of Structural Units for 6ILK
  • Retrieve 6ILK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ILK from S2C, [Save to disk]
    • View 6ILK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ILK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ilk_E] [6ilk_D] [6ilk_B] [6ilk_C] [6ilk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ILK
  • Community annotation for 6ILK at PDBWiki (http://pdbwiki.org)

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