6IM5 Transcription date Oct 22, 2018
title Yap-Binding Domain Of Human Tead1
authors Y.Mo, H.S.Lee, S.J.Kim, B.Ku
compound source
Molecule: Transcriptional Enhancer Factor Tef-1
Chain: A, B
Fragment: Yap-Binding Domain
Synonym: Ntef-1,Protein Gt-Iic,Tea Domain Family Member 1,T Transcription Factor 13,Tcf-13;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead1, Tcf13, Tef1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.537 89.356 135.569 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (6im5.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (6im5.pdb2.gz) 40 Kb
  • CSU: Contacts of Structural Units for 6IM5
  • Structure Factors (335 Kb)
  • Retrieve 6IM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IM5 from S2C, [Save to disk]
  • View 6IM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IM5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6im5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6im5_B] [6im5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IM5
  • Community annotation for 6IM5 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science