6IRF	Membrane Protein	date	Nov 12, 2018
title	Structure Of The Human Glun1glun2a Nmda Receptor In The Glutamateglycine-Bound State At Ph 6.3, Class I
authors	J.Zhang, S.Chang, X.Zhang, S.Zhu
compound		source
Molecule: Glutamate Receptor Ionotropic, Nmda 1 Chain: A, C Synonym: N-Methyl-D-Aspartate Receptor Subunit Nr1,Nmd-R1 Engineered: Yes Mutation: Yes Other_details: 2 Mm Glycine		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grin1, Nmdar1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gntl- Expression_system_atcc_number: Crl-3022
Molecule: Glutamate Receptor Ionotropic, Nmda 2a Chain: B, D Synonym: N-Methyl D-Aspartate Receptor Subtype 2a,Hnr2a Engineered: Yes Mutation: Yes Other_details: 2 Mm L-Glutamate		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grin2a Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gntl- Expression_system_atcc_number: Crl-3022
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	5.10 Å
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural Basis of the Proton Sensitivity of Human GluN1-GluN2A NMDA Receptors., Zhang JB, Chang S, Xu P, Miao M, Wu H, Zhang Y, Zhang T, Wang H, Zhang J, Xie C, Song N, Luo C, Zhang X, Zhu S, Cell Rep. 2018 Dec 26;25(13):3582-3590.e4. doi: 10.1016/j.celrep.2018.11.071. PMID:30590034

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (443 Kb) [Save to disk] Biological Unit Coordinates (6irf.pdb1.gz) 435 Kb CSU: Contacts of Structural Units for 6IRF Retrieve 6IRF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6IRF from S2C, [Save to disk]

View 6IRF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6IRF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6irf_D] [6irf_A] [6irf_C] [6irf_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6IRF at PDBWiki (http://pdbwiki.org)

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