6IRO	Dna Binding Protein Dna	date	Nov 13, 2018
title	The Crosslinked Complex Of Iswi-Nucleosome In The Adp-Bound
authors	L.J.Yan, H.Wu, X.M.Li, N.Gao, Z.C.Chen
compound		source
Molecule: Iswi Chromatin-Remodeling Complex Atpase Isw1 Chain: L Ec: 3.6.4.- Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Isw1, Ybr245c, Ybr1633 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Histone H3 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Xelaev_18002543mg Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Dna (167-Mer) Chain: I Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
Molecule: Dna (167-Mer) Chain: J Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.40 Å
ligand	ADP	enzyme	Hydrolase E.C.3.6.4 BRENDA
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D L
Primary reference	Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling., Yan L, Wu H, Li X, Gao N, Chen Z, Nat Struct Mol Biol. 2019 Mar 13. pii: 10.1038/s41594-019-0199-9. doi:, 10.1038/s41594-019-0199-9. PMID:30872815

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk] Biological Unit Coordinates (6iro.pdb1.gz) 284 Kb LPC: Ligand-Protein Contacts for 6IRO CSU: Contacts of Structural Units for 6IRO Retrieve 6IRO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6IRO from S2C, [Save to disk]

View 6IRO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6IRO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6iro_B] [6iro_J] [6iro_F] [6iro_A] [6iro_C] [6iro_D] [6iro_I] [6iro_E] [6iro_G] [6iro_L] [6iro_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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