6IRV Transferase date Nov 14, 2018
title Crystal Structure Of The Human Cap-Specific Adenosine Methyltransferase
authors S.Hirano, H.Nishimasu, R.Ishitani, O.Nureki
compound source
Molecule: Phosphorylated Ctd-Interacting Factor 1
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcif1, C20orf67
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pe-Sumo
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.699 120.309 156.831 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCap-specific terminal N (6)-methylation of RNA by an RNA polymerase II-associated methyltransferase., Akichika S, Hirano S, Shichino Y, Suzuki T, Nishimasu H, Ishitani R, Sugita A, Hirose Y, Iwasaki S, Nureki O, Suzuki T, Science. 2018 Nov 22. pii: science.aav0080. doi: 10.1126/science.aav0080. PMID:30467178
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (6irv.pdb1.gz) 167 Kb
  • Biological Unit Coordinates (6irv.pdb2.gz) 166 Kb
  • CSU: Contacts of Structural Units for 6IRV
  • Structure Factors (1568 Kb)
  • Retrieve 6IRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IRV from S2C, [Save to disk]
    • View 6IRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6IRV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6irv_B] [6irv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6IRV
  • Community annotation for 6IRV at PDBWiki (http://pdbwiki.org)

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