6ISU Hydrolase date Nov 19, 2018
title Crystal Structure Of Lys27-Linked Di-Ubiquitin In Complex Wi Selective Interacting Protein Uchl3
authors S.Ding, M.Pan, Q.Zheng, Y.Ren, D.Hong
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase Isozyme L3
Chain: A
Synonym: Uch-L3,Ubiquitin Thioesterase L3
Ec: 3.4.19.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uchl3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Ubiquitin
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Ubiquitin
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.407 94.204 91.178 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand SLZ enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChemical Protein Synthesis Enabled Mechanistic Studies on the Molecular Recognition of K27-linked Ubiquitin Chains., Pan M, Zheng Q, Ding S, Zhang L, Qu Q, Wang T, Hong D, Ren Y, Liang L, Chen C, Mei Z, Liu L, Angew Chem Int Ed Engl. 2019 Feb 25;58(9):2627-2631. doi: 10.1002/anie.201810814., Epub 2019 Jan 25. PMID:30589182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (6isu.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 6ISU
  • CSU: Contacts of Structural Units for 6ISU
  • Structure Factors (865 Kb)
  • Retrieve 6ISU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ISU from S2C, [Save to disk]
    • View 6ISU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ISU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6isu_C] [6isu_A] [6isu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ISU
  • Community annotation for 6ISU at PDBWiki (http://pdbwiki.org)

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