6ITW Antitoxin date Nov 26, 2018
title Crystal Structure Of Atu4351 From Agrobacterium Tumefaciens
authors L.Shi, Z.Gao, H.Zhang, Y.Dong
compound source
Molecule: Type Vi Immunity Protein Atu4351
Chain: A
Engineered: Yes
 Organism_scientific: Agrobacterium Fabrum (Strain C58 Atc
Organism_common: Agrobacterium Tumefaciens (Strain C58)
Organism_taxid: 176299
Strain: C58 Atcc 33970
Gene: Atu4351
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.445 92.445 86.157 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
Primary referenceCrystal structure of the type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens., Shi L, Gao Z, Zhang T, Zhang H, Dong Y, Acta Crystallogr F Struct Biol Commun. 2019 Mar 1;75(Pt 3):153-158. doi:, 10.1107/S2053230X19000815. Epub 2019 Feb 20. PMID:30839288
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (6itw.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 6ITW
  • CSU: Contacts of Structural Units for 6ITW
  • Structure Factors (440 Kb)
  • Retrieve 6ITW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ITW from S2C, [Save to disk]
    • View 6ITW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ITW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6itw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ITW
  • Community annotation for 6ITW at PDBWiki (http://pdbwiki.org)

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