6IUH Protein Binding date Nov 28, 2018
title Crystal Structure Of Git1 Pbd Domain In Complex With Liprin-
authors M.Liang, Z.Wei
compound source
Molecule: Arf Gtpase-Activating Protein Git1
Chain: A, B
Synonym: Arf Gap Git1,Cool-Associated And Tyrosine-Phosphor Protein 1,Cat1,G Protein-Coupled Receptor Kinase-Interactor Interacting Protein 1;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Git1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet32a

Molecule: Liprin-Alpha-2
Chain: C, D
Synonym: Protein Tyrosine Phosphatase Receptor Type F Polyp Interacting Protein Alpha-2,Ptprf-Interacting Protein Alpha
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppfia2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet32a
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.200 38.617 99.134 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand IOD enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceStructural basis of the target-binding mode of the G protein-coupled receptor kinase-interacting protein in the regulation of focal adhesion dynamics., Liang M, Xie X, Pan J, Jin G, Yu C, Wei Z, J Biol Chem. 2019 Feb 8. pii: RA118.006915. doi: 10.1074/jbc.RA118.006915. PMID:30737283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (6iuh.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (6iuh.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 6IUH
  • CSU: Contacts of Structural Units for 6IUH
  • Structure Factors (229 Kb)
  • Retrieve 6IUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IUH from S2C, [Save to disk]
  • View 6IUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IUH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6iuh_C] [6iuh_B] [6iuh_A] [6iuh_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IUH
  • Community annotation for 6IUH at PDBWiki (http://pdbwiki.org)

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