6IXE Signaling Protein date Dec 10, 2018
title Crystal Structure Of Semet Apo Sh3bp5 (I41)
authors S.Goto-Ito, A.Yamagata, Y.Sato, S.Fukai
compound source
Molecule: Sh3 Domain-Binding Protein 5
Chain: A
Synonym: Sh3bp-5,Sh3 Domain-Binding Protein That Preferenti Associates With Btk;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sh3bp5, Sab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41
R_factor 0.269 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.250 79.250 108.076 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.35 Å
ligand MSE, SIN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of guanine nucleotide exchange for Rab11 by SH3BP5., Goto-Ito S, Morooka N, Yamagata A, Sato Y, Sato K, Fukai S, Life Sci Alliance. 2019 Mar 14;2(2). pii: 2/2/e201900297. doi:, 10.26508/lsa.201900297. Print 2019 Apr. PMID:30872413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (6ixe.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 6IXE
  • CSU: Contacts of Structural Units for 6IXE
  • Structure Factors (208 Kb)
  • Retrieve 6IXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IXE from S2C, [Save to disk]
  • View 6IXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IXE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ixe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IXE
  • Community annotation for 6IXE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science