6IXV	Signaling Protein	date	Dec 12, 2018
title	Crystal Structure Of Sh3bp5-Rab11a
authors	S.Goto-Ito, A.Yamagata, Y.Sato, S.Fukai
compound		source
Molecule: Sh3 Domain-Binding Protein 5 Chain: A, B, C, D Synonym: Sh3bp-5,Sh3 Domain-Binding Protein That Preferenti Associates With Btk; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sh3bp5, Sab Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ras-Related Protein Rab-11a Chain: E, F, G, H Synonym: Rab-11,Yl8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11a, Rab11 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.229 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.806 199.075 303.896 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.80 Å
ligand	PO4	enzyme
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G
Primary reference	Structural basis of guanine nucleotide exchange for Rab11 by SH3BP5., Goto-Ito S, Morooka N, Yamagata A, Sato Y, Sato K, Fukai S, Life Sci Alliance. 2019 Mar 14;2(2). pii: 2/2/e201900297. doi:, 10.26508/lsa.201900297. Print 2019 Apr. PMID:30872413

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk] Biological Unit Coordinates (6ixv.pdb1.gz) 67 Kb Biological Unit Coordinates (6ixv.pdb2.gz) 67 Kb Biological Unit Coordinates (6ixv.pdb3.gz) 65 Kb Biological Unit Coordinates (6ixv.pdb4.gz) 66 Kb LPC: Ligand-Protein Contacts for 6IXV CSU: Contacts of Structural Units for 6IXV Structure Factors (525 Kb) Retrieve 6IXV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6IXV from S2C, [Save to disk]

View 6IXV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6IXV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ixv_E] [6ixv_G] [6ixv_D] [6ixv_C] [6ixv_F] [6ixv_B] [6ixv_H] [6ixv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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