6J4E Dna Binding Protein Dna date Jan 08, 2019
title Crystal Structure Of The Atwrky1 Domain
authors Y.P.Xu, H.Xu, B.Wang, X.D.Su
compound source
Molecule: Dna (5'-D(Apgpcpcptptptpgpapcpcpapgp 3');
Chain: C
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702

Molecule: Dna (5'-D(Tpcpgpcptpgpgptpcpapapapgp 3');
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702

Molecule: Wrky Transcription Factor 1
Chain: B
Synonym: Transcription Factor Zap1,Wrky Dna-Binding Protein Dependent Activator Protein 1;
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Wrky1, Zap1, At2g04880, F1o13.1, F28i8.34
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.203 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.000 99.000 114.333 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.13 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (6j4e.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 6J4E
  • CSU: Contacts of Structural Units for 6J4E
  • Structure Factors (145 Kb)
  • Retrieve 6J4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J4E from S2C, [Save to disk]
    • View 6J4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6J4E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j4e_B] [6j4e_C] [6j4e_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6J4E
  • Community annotation for 6J4E at PDBWiki (http://pdbwiki.org)

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