6J4F Dna Binding Protein Dna date Jan 08, 2019
title Crystal Structure Of The Atwrky2 Domain
authors Y.P.Xu, H.Xu, B.Wang, X.D.Su
compound source
Molecule: Probable Wrky Transcription Factor 2
Chain: B, F
Synonym: Wrky Dna-Binding Protein 2
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Wrky2, At5g56270, K24c1.9, Mxk23.1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apgpcpcptptptpgpapcpcpapgp 3');
Chain: C, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702

Molecule: Dna (5'-D(Tpcpgpcptpgpgptpcpapapapgp 3');
Chain: D, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702
symmetry Space Group: P 1
R_factor 0.188 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
38.100 48.300 69.100 93.70 87.30 97.50
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme
F, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (6j4f.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (6j4f.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 6J4F
  • CSU: Contacts of Structural Units for 6J4F
  • Structure Factors (367 Kb)
  • Retrieve 6J4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J4F from S2C, [Save to disk]
  • View 6J4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J4F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6j4f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j4f_F] [6j4f_G] [6j4f_D] [6j4f_C] [6j4f_B] [6j4f_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J4F
  • Community annotation for 6J4F at PDBWiki (http://pdbwiki.org)

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