6J4O Hydrolase date Jan 10, 2019
title Structural Basis Of Tubulin Detyrosination By Vasohibins-Svb Complex And Functional Implications
authors N.Wang, H.Huang
compound source
Molecule: Tubulinyl-Tyr Carboxypeptidase 2
Chain: A
Synonym: Vasohibin-2,Vasohibin-Like Protein
Ec: 3.4.17.17
Engineered: Yes
Other_details: Sf File Contains Friedel Pairs.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vash2, Vashl
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rsfduet

Molecule: Small Vasohibin-Binding Protein
Chain: B
Synonym: Coiled Coil Domain-Containing Protein 23
Engineered: Yes
Other_details: Sf File Contains Friedel Pairs.

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Svbp, Ccdc23
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rsfduet
symmetry Space Group: F 2 2 2
R_factor 0.184 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.140 123.248 195.171 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, MSE, PO4 enzyme Hydrolase E.C.3.4.17.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (6j4o.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 6J4O
  • CSU: Contacts of Structural Units for 6J4O
  • Structure Factors (664 Kb)
  • Retrieve 6J4O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J4O from S2C, [Save to disk]
  • View 6J4O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J4O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j4o_A] [6j4o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J4O
  • Community annotation for 6J4O at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science