6J4R Transcription Dna date Jan 10, 2019
title Structural Basis For The Target Dna Recognition And Binding Domain Of Phosphate Starvation Response Regulator 1
authors M.Q.Jiang, L.F.Sun, M.N.Isupov
compound source
Molecule: Protein Phosphate Starvation Response 1
Chain: A, B, C, D
Fragment: Myb Domain
Synonym: Atphr1
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Phr1, At4g28610, T5f17.60
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Dna (5'-D(Cpcpaptpaptpaptpgpapc)-3')
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gptpcpaptpaptpaptpgpg)-3')
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpgptpaptpaptpapcptpg)-3')
Chain: X
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Cpapgptpaptpaptpapcpc)-3')
Chain: Y
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 42 21 2
R_factor 0.215 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.966 88.966 143.445 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Primary referenceStructural Basis for the Target DNA Recognition and Binding by the MYB Domain of Phosphate Starvation Response 1., Jiang M, Sun L, Isupov MN, Littlechild JA, Wu X, Wang Q, Wang Q, Yang W, Wu Y, FEBS J. 2019 Apr 11. doi: 10.1111/febs.14846. PMID:30974511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (6j4r.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (6j4r.pdb2.gz) 28 Kb
  • CSU: Contacts of Structural Units for 6J4R
  • Structure Factors (615 Kb)
  • Retrieve 6J4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J4R from S2C, [Save to disk]
    • View 6J4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6J4R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j4r_B] [6j4r_X] [6j4r_Y] [6j4r_E] [6j4r_F] [6j4r_C] [6j4r_A] [6j4r_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6J4R
  • Community annotation for 6J4R at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science