6J4V	Hydrolase	date	Jan 10, 2019
title	Structural Basis Of Tubulin Detyrosination By Vasohibins-Svb Complex And Functional Implications
authors	N.Wang, H.Bao, H.Huang
compound		source
Molecule: Tubulinyl-Tyr Carboxypeptidase 2 Chain: A Synonym: Vasohibin-2,Vasohibin-Like Protein Ec: 3.4.17.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vash2, Vashl Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Rsfduet
Molecule: Small Vasohibin-Binding Protein Chain: B Synonym: Coiled Coil Domain-Containing Protein 23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Svbp, Ccdc23 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Rsfduet
Molecule: Tubulin Alpha-1b Chain Chain: C Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tuba1b Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p
symmetry	Space Group: F 2 2 2	R_factor 0.169 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.281 122.413 194.269 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	GOL, PO4	enzyme	Hydrolase E.C.3.4.17.17 BRENDA
Gene Ontology	Chain Function Process Component A B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (6j4v.pdb1.gz) 102 Kb LPC: Ligand-Protein Contacts for 6J4V CSU: Contacts of Structural Units for 6J4V Structure Factors (728 Kb) Retrieve 6J4V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6J4V from S2C, [Save to disk]

View 6J4V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6J4V

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6j4v_B] [6j4v_C] [6j4v_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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