6J7B Hydrolase date Jan 17, 2019
title Crystal Structure Of Vash1-Svbp In Complex With Epoy
authors N.Wang, H.Bao, H.Huang, B.Wu
compound source
Molecule: Tubulinyl-Tyr Carboxypeptidase 1
Chain: A
Synonym: Tubulin Carboxypeptidase 1,Tyrosine Carboxypeptida 1,Vasohibin-1;
Ec: 3.4.17.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vash1, Kiaa1036, Vash
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Vasohibin-Binding Protein
Chain: B
Synonym: Coiled Coil Domain-Containing Protein 23
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Svbp, Ccdc23
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.178 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.310 70.920 128.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand BJL enzyme Hydrolase E.C.3.4.17.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis of vasohibins-mediated detyrosination and its impact on spindle function and mitosis., Liao S, Rajendraprasad G, Wang N, Eibes S, Gao J, Yu H, Wu G, Tu X, Huang H, Barisic M, Xu C, Cell Res. 2019 Jun 6. pii: 10.1038/s41422-019-0187-y. doi:, 10.1038/s41422-019-0187-y. PMID:31171830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (6j7b.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 6J7B
  • CSU: Contacts of Structural Units for 6J7B
  • Structure Factors (1367 Kb)
  • Retrieve 6J7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J7B from S2C, [Save to disk]
  • View 6J7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J7B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j7b_B] [6j7b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J7B
  • Community annotation for 6J7B at PDBWiki (http://pdbwiki.org)

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