6J8I Membrane Protein date Jan 19, 2019
title Structure Of Human Voltage-Gated Sodium Channel Nav1.7 In Co Auxiliary Beta Subunits, Protx-II And Tetrodotoxin (Y1755 U
authors H.Shen, D.Liu, J.Lei, N.Yan
compound source
Molecule: Sodium Channel Subunit Beta-2
Chain: C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scn2b, Unq326pro386
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Sodium Channel Protein Type 9 Subunit Alpha
Chain: A
Synonym: Neuroendocrine Sodium Channel,Hne-Na,Peripheral So Channel 1,Pn1,Sodium Channel Protein Type Ix Subunit Alpha, Gated Sodium Channel Subunit Alpha Nav1.7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scn9a, Nena
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Sodium Channel Subunit Beta-1
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scn1b
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceStructures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins., Shen H, Liu D, Wu K, Lei J, Yan N, Science. 2019 Feb 14. pii: science.aaw2493. doi: 10.1126/science.aaw2493. PMID:30765606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (6j8i.pdb1.gz) 237 Kb
  • CSU: Contacts of Structural Units for 6J8I
  • Retrieve 6J8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J8I from S2C, [Save to disk]
  • View 6J8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J8I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6j8i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j8i_A] [6j8i_C] [6j8i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J8I
  • Community annotation for 6J8I at PDBWiki (http://pdbwiki.org)

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