6J8N Peptide Binding Protein Hydrolase date Jan 20, 2019
title Crystal Structure Of Svbp-Vash1 Complex, Mutation C169a Of V
authors S.Liao, J.Gao, C.Xu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Small Vasohibin-Binding Protein
Chain: A, C
Synonym: Coiled Coil Domain-Containing Protein 23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Svbp, Ccdc23
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Tubulinyl-Tyr Carboxypeptidase 1
Chain: B, D
Synonym: Tubulin Carboxypeptidase 1,Tyrosine Carboxypeptida 1,Vasohibin-1;
Ec: 3.4.17.17
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vash1, Kiaa1036, Vash
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.020 90.078 124.498 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand
enzyme Hydrolase E.C.3.4.17.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceMolecular basis of vasohibins-mediated detyrosination and its impact on spindle function and mitosis., Liao S, Rajendraprasad G, Wang N, Eibes S, Gao J, Yu H, Wu G, Tu X, Huang H, Barisic M, Xu C, Cell Res. 2019 Jun 6. pii: 10.1038/s41422-019-0187-y. doi:, 10.1038/s41422-019-0187-y. PMID:31171830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (6j8n.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (6j8n.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 6J8N
  • Structure Factors (1422 Kb)
  • Retrieve 6J8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J8N from S2C, [Save to disk]
  • View 6J8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J8N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j8n_C] [6j8n_A] [6j8n_D] [6j8n_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J8N
  • Community annotation for 6J8N at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science