6J8O Peptide Binding Protein Hydrolase date Jan 20, 2019
title Structure Of A Hypothetical Protease
authors S.Liao, J.Gao, C.Xu
compound source
Molecule: Small Vasohibin-Binding Protein
Chain: A
Synonym: Coiled Coil Domain-Containing Protein 23
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Svbp, Ccdc23
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Tubulinyl-Tyr Carboxypeptidase 1
Chain: B
Synonym: Tubulin Carboxypeptidase 1,Tyrosine Carboxypeptida 1,Vasohibin-1;
Ec: 3.4.17.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vash1, Kiaa1036, Vash
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: 8-Mer Peptide
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.177 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.641 127.360 44.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand
enzyme Hydrolase E.C.3.4.17.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (6j8o.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 6J8O
  • Structure Factors (873 Kb)
  • Retrieve 6J8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J8O from S2C, [Save to disk]
    • View 6J8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6J8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j8o_C] [6j8o_B] [6j8o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6J8O
  • Community annotation for 6J8O at PDBWiki (http://pdbwiki.org)

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