6J99	Transcription	date	Jan 22, 2019
title	Cryo-Em Structure Of Human Dot1l In Complex With An H2b- Monoubiquitinated Nucleosome
authors	T.Yao, J.Huang
compound		source
Molecule: Histone H3 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Xelaev_18002543mg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (144-Mer) Chain: I Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (145-Mer) Chain: J Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Ubiquitin Chain: L Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rps27a, Uba80, Ubcep1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79 Chain: K Synonym: Dot1-Like Protein,Histone H3-K79 Methyltransferase Hmtase,Lysine N-Methyltransferase 4; Ec: 2.1.1.43 Engineered: Yes Other_details: S-Adenosyl-L-Homocysteine		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dot1l, Kiaa1814, Kmt4 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.10 Å
ligand	SAH	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D K
Primary reference	Structural basis of the crosstalk between histone H2B monoubiquitination and H3 lysine 79 methylation on nucleosome., Yao T, Jing W, Hu Z, Tan M, Cao M, Wang Q, Li Y, Yuan G, Lei M, Huang J, Cell Res. 2019 Feb 15. pii: 10.1038/s41422-019-0146-7. doi:, 10.1038/s41422-019-0146-7. PMID:30770869

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk] Biological Unit Coordinates (6j99.pdb1.gz) 306 Kb LPC: Ligand-Protein Contacts for 6J99 CSU: Contacts of Structural Units for 6J99 Retrieve 6J99 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6J99 from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6j99_H] [6j99_J] [6j99_C] [6j99_G] [6j99_E] [6j99_D] [6j99_F] [6j99_L] [6j99_B] [6j99_K] [6j99_A] [6j99_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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