6JE0 Hydrolase date Feb 02, 2019
title Ligand Complex Structure Of Gh10 Family Xylanase Xynaf1, Soa 30 Minutes
authors G.Li, Y.Miao, R.Zhang
compound source
Molecule: Beta-Xylanase
Chain: A, B
Synonym: Beta-1,4-Xylanase
Ec: 3.2.1.8
Engineered: Yes
 Organism_scientific: Aspergillus Fumigatus Z5
Organism_taxid: 1437362
Gene: Y699_04481
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1
R_factor 0.139 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.426 57.357 64.910 73.97 80.80 68.77
method X-Ray Diffractionresolution 1.43 Å
ligand GOL, MES, NAG, PEG, XYP enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (6je0.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (6je0.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 6JE0
  • CSU: Contacts of Structural Units for 6JE0
  • Structure Factors (2722 Kb)
  • Retrieve 6JE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JE0 from S2C, [Save to disk]
    • View 6JE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JE0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6je0_A] [6je0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JE0
  • Community annotation for 6JE0 at PDBWiki (http://pdbwiki.org)

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