6JGW Transcription Dna date Feb 15, 2019
title Crystal Structure Of The Transcriptional Regulator Cadr From In Complex With Dna
authors X.C.Liu, J.H.Gan, H.Chen
compound source
Molecule: Cadr
Chain: B, A
Synonym: Cd(II)Pb(II)-Responsive Transcriptional Regulator
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_common: Arthrobacter Siderocapsulatus
Organism_taxid: 303
Atcc: 47054
Gene: Cadr, Biw19_10095, Bl240_26950
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (27-Mer)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303

Molecule: Dna (27-Mer)
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.254
length a length b length c angle alpha angle beta angle gamma
67.967 54.541 86.259 90.00 100.37 90.00
method X-Ray Diffractionresolution 2.80 Å
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (6jgw.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 6JGW
  • Structure Factors (405 Kb)
  • Retrieve 6JGW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JGW from S2C, [Save to disk]
  • View 6JGW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JGW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6jgw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jgw_B] [6jgw_C] [6jgw_A] [6jgw_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JGW
  • Community annotation for 6JGW at PDBWiki (http://pdbwiki.org)

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