6JM9	Gene Regulation	date	Mar 07, 2019
title	Cryo-Em Structure Of Dot1l Bound To Unmodified Nucleosome
authors	S.Jang, J.J.Song
compound		source
Molecule: Dna Strand I Chain: I Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_strain: Dh5[Alpha]
Molecule: Dna Strand J Chain: J Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_strain: Dh5[Alpha]
Molecule: Histone H3.2 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79 Chain: X Synonym: Dot1-Like Protein Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dot1l Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	7.30 Å
ligand	SAM	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D X
Primary reference	Structural basis of recognition and destabilization of the histone H2B ubiquitinated nucleosome by the DOT1L histone H3 Lys79 methyltransferase., Jang S, Kang C, Yang HS, Jung T, Hebert H, Chung KY, Kim SJ, Hohng S, Song JJ, Genes Dev. 2019 Mar 28. pii: gad.323790.118. doi: 10.1101/gad.323790.118. PMID:30923167

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk] Biological Unit Coordinates (6jm9.pdb1.gz) 264 Kb LPC: Ligand-Protein Contacts for 6JM9 CSU: Contacts of Structural Units for 6JM9 Retrieve 6JM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6JM9 from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6jm9_D] [6jm9_H] [6jm9_C] [6jm9_G] [6jm9_A] [6jm9_X] [6jm9_J] [6jm9_B] [6jm9_E] [6jm9_F] [6jm9_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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