6JMA	Gene Regulation	date	Mar 07, 2019
title	Cryo-Em Structure Of Dot1l Bound To H2b Ubiquitinated Nucleo
authors	S.Jang, J.J.Song
compound		source
Molecule: Dna I&J Chain: I, J Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369
Molecule: Histone H3.2 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Bl21
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Bl21
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Bl21
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Bl21
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79 Chain: X Synonym: Dot1-Like Protein Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dot1l Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Bl21
Molecule: Ubiquitin Chain: Y Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Bl21
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	6.80 Å
ligand	SAM	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D X
Primary reference	Structural basis of recognition and destabilization of the histone H2B ubiquitinated nucleosome by the DOT1L histone H3 Lys79 methyltransferase., Jang S, Kang C, Yang HS, Jung T, Hebert H, Chung KY, Kim SJ, Hohng S, Song JJ, Genes Dev. 2019 Mar 28. pii: gad.323790.118. doi: 10.1101/gad.323790.118. PMID:30923167

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk] Biological Unit Coordinates (6jma.pdb1.gz) 266 Kb LPC: Ligand-Protein Contacts for 6JMA CSU: Contacts of Structural Units for 6JMA Retrieve 6JMA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6JMA from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6jma_D] [6jma_B] [6jma_I] [6jma_A] [6jma_E] [6jma_C] [6jma_G] [6jma_J] [6jma_F] [6jma_H] [6jma_Y] [6jma_X] SWISS-PROT database: Domain organization of by SWISSPFAM

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