6JMQ Membrane Protein Immune System date Mar 13, 2019
title Lat1-Cd98hc Complex Bound To Mem-108 Fab
authors Y.Lee, T.Nishizawa, T.Kusakizako, K.Oda, R.Ishitani, T.Nakane, O.N
compound source
Molecule: Large Neutral Amino Acids Transporter Small Subun
Chain: A
Synonym: 4f2 Light Chain,4f2lc,Cd98 Light Chain,Integral Me Protein E16,L-Type Amino Acid Transporter 1,Hlat1,Solute Ca Family 7 Member 5,Y+ System Cationic Amino Acid Transporter
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc7a5, Cd98lc, Lat1, Mpe16
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-

Molecule: 4f2 Cell-Surface Antigen Heavy Chain
Chain: B
Synonym: Glycoprotein, 4f2hc,4f2 Heavy Chain Antigen,Lympho Activation Antigen 4f2 Large Subunit,Solute Carrier Family 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc3a2, Mdu1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-

Molecule: Antibody
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090

Molecule: Antibody
Chain: D
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.31 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • L-leucine transmembrane tran...


  • B
  • calcium:sodium antiporter ac...


  • Primary referenceCryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc., Lee Y, Wiriyasermkul P, Jin C, Quan L, Ohgaki R, Okuda S, Kusakizako T, Nishizawa T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Endou H, Nagamori S, Kanai Y, Nureki O, Nat Struct Mol Biol. 2019 Jun;26(6):510-517. doi: 10.1038/s41594-019-0237-7. Epub, 2019 Jun 3. PMID:31160781
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (6jmq.pdb1.gz) 181 Kb
  • CSU: Contacts of Structural Units for 6JMQ
  • Retrieve 6JMQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JMQ from S2C, [Save to disk]
  • View 6JMQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JMQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6jmq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jmq_C] [6jmq_A] [6jmq_B] [6jmq_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JMQ
  • Community annotation for 6JMQ at PDBWiki (http://pdbwiki.org)

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