6JNI Transcription Dna date Mar 16, 2019
title Crystal Structure Of The Transcriptional Regulator Cadr From In Complex With Zinc(II) And Dna
authors X.C.Liu, J.H.Gan, H.Chen
compound source
Molecule: Cadr
Chain: A, B, C, D, E, F, G, H
Synonym: Cd(II)Pb(II)-Responsive Transcriptional Regulator
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_common: Arthrobacter Siderocapsulatus
Organism_taxid: 303
Atcc: 47054
Gene: Cadr, Biw19_10095, Bl240_26950
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (25-Mer)
Chain: I, K, M, O
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303

Molecule: Dna (25-Mer)
Chain: J, L, N, P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
symmetry Space Group: P 1
R_factor 0.212 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.090 71.329 98.797 81.03 83.52 73.85
method X-Ray Diffractionresolution 2.90 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (6jni.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (6jni.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (6jni.pdb3.gz) 65 Kb
  • Biological Unit Coordinates (6jni.pdb4.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 6JNI
  • CSU: Contacts of Structural Units for 6JNI
  • Structure Factors (925 Kb)
  • Retrieve 6JNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JNI from S2C, [Save to disk]
  • View 6JNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JNI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jni_K] [6jni_J] [6jni_B] [6jni_E] [6jni_C] [6jni_L] [6jni_N] [6jni_D] [6jni_A] [6jni_G] [6jni_M] [6jni_I] [6jni_H] [6jni_F] [6jni_O] [6jni_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JNI
  • Community annotation for 6JNI at PDBWiki (http://pdbwiki.org)

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