6JO8 Viral Protein date Mar 20, 2019
title The Complex Structure Of Chikv Envelope Glycoprotein Bound T Mxra8
authors H.Song, Z.Zhao, J.Qi, F.Gao, F.G.Gao
compound source
Molecule: Togavirin
Chain: A, C, E
Synonym: Chikv P62
Ec: 3.4.21.90
Engineered: Yes
 Organism_scientific: Chikungunya Virus
Organism_common: Chikv
Organism_taxid: 37124
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: High5

Molecule: Chikv E1
Chain: B, D, F
Engineered: Yes
Organism_scientific: Chikungunya Virus
Organism_common: Chikv
Organism_taxid: 37124
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: High5

Molecule: Matrix Remodeling-Associated Protein 8
Chain: M, N, O
Synonym: Mxra8, Limitrin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mxra8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.248 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
208.790 208.790 299.739 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand NAG, NDG enzyme Hydrolase E.C.3.4.21.90 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C


F, B, D


O, N, M


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1015 Kb) [Save to disk]
  • Biological Unit Coordinates (6jo8.pdb1.gz) 354 Kb
  • Biological Unit Coordinates (6jo8.pdb2.gz) 336 Kb
  • Biological Unit Coordinates (6jo8.pdb3.gz) 332 Kb
  • LPC: Ligand-Protein Contacts for 6JO8
  • CSU: Contacts of Structural Units for 6JO8
  • Structure Factors (1188 Kb)
  • Retrieve 6JO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JO8 from S2C, [Save to disk]
    • View 6JO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JO8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jo8_N] [6jo8_A] [6jo8_F] [6jo8_M] [6jo8_D] [6jo8_O] [6jo8_E] [6jo8_B] [6jo8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JO8
  • Community annotation for 6JO8 at PDBWiki (http://pdbwiki.org)

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