6JOD Signaling Protein date Mar 20, 2019
title Angiotensin II Type 2 Receptor With Ligand
authors H.Asada, S.Iwata, K.Hirata, T.Shimamura
compound source
Molecule: Type-2 Angiotensin II Receptor
Chain: A
Synonym: Angiotensin II Type-2 Receptor,At2
Engineered: Yes
Mutation: Yes
Other_details: 1-34 And 347-363 Deleted.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Agtr2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Angiotensin II
Chain: B
Engineered: Yes
Other_details: Endogenous Ligand Of Angiotensin Receptor

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Soluble Cytochrome B562,Soluble Cytochrome B562
Chain: C
Synonym: Cytochrome B-562,Cytochrome B-562
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Heavy Chain Of 4a03fab
Chain: H

Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Light Chain Of 4a03fab
Chain: L

Organism_scientific: Mus Musculus
Organism_taxid: 10090
symmetry Space Group: C 2 2 21
R_factor 0.235 R_Free 0.287
length a length b length c angle alpha angle beta angle gamma
102.550 426.430 52.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (6jod.pdb1.gz) 275 Kb
  • CSU: Contacts of Structural Units for 6JOD
  • Structure Factors (305 Kb)
  • Retrieve 6JOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JOD from S2C, [Save to disk]
  • View 6JOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JOD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6jod from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jod_L] [6jod_H] [6jod_B] [6jod_A] [6jod_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JOD
  • Community annotation for 6JOD at PDBWiki (http://pdbwiki.org)

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