6JOJ Oncoprotein date Mar 22, 2019
title Crystal Structure Of Pdgfra T674i In Complex With Crenolanib Soaking
authors L.Liang, X.E.Yan, C.H.Yun
compound source
Molecule: Platelet-Derived Growth Factor Receptor Alpha
Chain: A
Synonym: Pdgfr-Alpha,Alpha Platelet-Derived Growth Factor R Alpha-Type Platelet-Derived Growth Factor Receptor,Cd140 An Family Member A,Cd140a Antigen,Platelet-Derived Growth Fact Receptor,Platelet-Derived Growth Factor Receptor 2,Pdgfr-2;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdgfra, Pdgfr2, Rhepdgfra
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 31 2 1
R_factor 0.224 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.556 100.556 110.987 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand 6T2, CL, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (6joj.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 6JOJ
  • CSU: Contacts of Structural Units for 6JOJ
  • Structure Factors (200 Kb)
  • Retrieve 6JOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JOJ from S2C, [Save to disk]
    • View 6JOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JOJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6joj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JOJ
  • Community annotation for 6JOJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science