6JOU	Dna Binding Protein Dna	date	Mar 23, 2019
title	Crystal Structure Of The Human Nucleosome Containing H2a.Z.1
authors	N.Horikoshi, K.Sato, Y.Mizukami, H.Kurumizaka
compound		source
Molecule: Histone H3.1 Chain: A, E Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a, H3fa, Hist1h3b, H3fl, Hist1h3c, H3fc, Hist1 H3fb, Hist1h3e, H3fd, Hist1h3f, H3fi, Hist1h3g, H3fh, Hist1 H3fk, Hist1h3i, H3ff, Hist1h3j, H3fj; Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2a.Z Chain: C, G Synonym: H2az Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: H2afz, H2az Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgem-T Easy
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.955 108.170 169.812 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.17 Å
ligand	MN	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Structure-based design of an H2A.Z.1 mutant stabilizing a nucleosome in vitro and in vivo., Horikoshi N, Kujirai T, Sato K, Kimura H, Kurumizaka H, Biochem Biophys Res Commun. 2019 Aug 6;515(4):719-724. doi:, 10.1016/j.bbrc.2019.06.012. Epub 2019 Jun 8. PMID:31186139

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk] Biological Unit Coordinates (6jou.pdb1.gz) 238 Kb LPC: Ligand-Protein Contacts for 6JOU CSU: Contacts of Structural Units for 6JOU Structure Factors (2575 Kb) Retrieve 6JOU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6JOU from S2C, [Save to disk]

View 6JOU in 3D

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Visual 3D analysis of 6JOU

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6jou_G] [6jou_H] [6jou_E] [6jou_D] [6jou_C] [6jou_I] [6jou_A] [6jou_B] [6jou_F] [6jou_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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