6JUN Replication Dna date Apr 15, 2019
title Msdpo4-Dna Complex 3
authors D.T.Nair, M.K.Johnson
compound source
Molecule: Dna Polymerase Iv
Chain: F, A
Synonym: Pol Iv
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155
Organism_taxid: 246196
Variant: Atcc 700084 Mc(2)155
Gene: Msmeg_1014, Msmeg_2294
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Ptpapgpgpapcpcpc)-3')
Chain: H, G, C, B
Engineered: Yes
Other_details: Dna Primer
Synthetic: Yes
Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 1772
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.920 81.320 210.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.51 Å
ligand 0KX, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A
  • DNA-directed DNA polymerase ...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (6jun.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (6jun.pdb2.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 6JUN
  • CSU: Contacts of Structural Units for 6JUN
  • Structure Factors (1411 Kb)
  • Retrieve 6JUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JUN from S2C, [Save to disk]
    • View 6JUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JUN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jun_F] [6jun_H] [6jun_A] [6jun_C] [6jun_G] [6jun_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JUN
  • Community annotation for 6JUN at PDBWiki (http://pdbwiki.org)

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