6K7H Membrane Protein date Jun 07, 2019
title Cryo-Em Structure Of The Human P4-Type Flippase Atp8a1-Cdc50 Class2)
authors M.Hiraizumi, K.Yamashita, T.Nishizawa, O.Nureki
compound source
Molecule: Phospholipid-Transporting Atpase
Chain: A
Ec: 7.6.2.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.4

Molecule: Cell Cycle Control Protein 50a
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc50a
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.4
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.22 Å
ligand MAN, NAG, Y01 enzyme E.C.7.6.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • cation-transporting ATPase a...


  • C
  • aminophospholipid transmembr...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (6k7h.pdb1.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 6K7H
  • CSU: Contacts of Structural Units for 6K7H
  • Retrieve 6K7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6K7H from S2C, [Save to disk]
  • View 6K7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6K7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6k7h_C] [6k7h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6K7H
  • Community annotation for 6K7H at PDBWiki (http://pdbwiki.org)

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