6KDY Oxidoreductase date Jul 03, 2019
title Crystal Structure Of The Alpha Bata Heterodimer Of Human Idh Complex With Nad.
authors P.Sun, J.Ding
compound source
Molecule: Isocitrate Dehydrogenase [Nad] Subunit Alpha, Mitochondrial;
Chain: A, C, E, G
Synonym: Isocitric Dehydrogenase Subunit Alpha,Nad(+)-Speci Subunit Alpha;
Ec: 1.1.1.41
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Idh3a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Isocitrate Dehydrogenase [Nad] Subunit Beta, Mito
Chain: B, D, F, H
Synonym: Isocitric Dehydrogenase Subunit Beta,Nad(+)-Specif Subunit Beta;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Idh3b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.460 162.979 114.407 90.00 100.31 90.00
method X-Ray Diffractionresolution 3.02 Å
ligand 2PE, NAD, P6G, PE7, PG4 enzyme Oxidoreductase E.C.1.1.1.41 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (409 Kb) [Save to disk]
  • Biological Unit Coordinates (6kdy.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (6kdy.pdb2.gz) 106 Kb
  • Biological Unit Coordinates (6kdy.pdb3.gz) 104 Kb
  • Biological Unit Coordinates (6kdy.pdb4.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 6KDY
  • CSU: Contacts of Structural Units for 6KDY
  • Structure Factors (1823 Kb)
  • Retrieve 6KDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KDY from S2C, [Save to disk]
  • View 6KDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KDY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kdy_E] [6kdy_A] [6kdy_C] [6kdy_B] [6kdy_H] [6kdy_G] [6kdy_F] [6kdy_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KDY
  • Community annotation for 6KDY at PDBWiki (http://pdbwiki.org)

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