6KE9 Dna Binding Protein Dna date Jul 04, 2019
title The Human Telomeric Nucleosome Displays Distinct Structural Dynamic Properties
authors A.Soman, C.W.Liew, H.L.Teo, N.Berezhnoy, N.Korolev, D.Rhodes, L.Nordenskiold
compound source
Molecule: Histone H3.1
Chain: A, E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1-Be
Chain: C, G
Synonym: Histone H2a
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b Type 1-K
Chain: D, H
Synonym: Histone H2b
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Human Telomeric Dna (145-Mer)
Chain: I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Human Telomeric Dna (145-Mer)
Chain: J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.133 109.319 176.969 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceThe human telomeric nucleosome displays distinct structural and dynamic properties., Soman A, Liew CW, Teo HL, Berezhnoy NV, Olieric V, Korolev N, Rhodes D, Nordenskiold L, Nucleic Acids Res. 2020 Jun 4;48(10):5383-5396. doi: 10.1093/nar/gkaa289. PMID:32374876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (521 Kb) [Save to disk]
  • Biological Unit Coordinates (6ke9.pdb1.gz) 514 Kb
  • LPC: Ligand-Protein Contacts for 6KE9
  • CSU: Contacts of Structural Units for 6KE9
  • Structure Factors (1716 Kb)
  • Retrieve 6KE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KE9 from S2C, [Save to disk]
  • View 6KE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KE9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ke9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ke9_E] [6ke9_G] [6ke9_D] [6ke9_H] [6ke9_I] [6ke9_C] [6ke9_B] [6ke9_A] [6ke9_F] [6ke9_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KE9
  • Community annotation for 6KE9 at PDBWiki (http://pdbwiki.org)

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