6KKS Dna Binding Protein Dna date Jul 27, 2019
title Structural Insights Into Target Dna Recognition By R2r3-Type Transcription Factor
authors B.Wang, Q.Luo
compound source
Molecule: Transcription Factor Wer
Chain: A
Synonym: Myb-Related Protein 66,Atmyb66,Protein Werewolf
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Wer
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Dna (5'- D(Apapaptptpcptpcpcpapapcpcpgpcpaptptptp 3');
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702

Molecule: Dna (5'- D(Cpgpapapapaptpgpcpgpgptptpgpgpapgpapap 3');
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_taxid: 3702
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.084 63.927 73.956 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (6kks.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 6KKS
  • CSU: Contacts of Structural Units for 6KKS
  • Structure Factors (205 Kb)
  • Retrieve 6KKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KKS from S2C, [Save to disk]
    • View 6KKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6KKS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kks_B] [6kks_C] [6kks_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6KKS
  • Community annotation for 6KKS at PDBWiki (http://pdbwiki.org)

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