6KM6 Lyase date Jul 30, 2019
title Human Carbonic Anhydrase II Native 15 Atm Co2
authors C.U.Kim, J.K.Kim
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.105 R_Free 0.134
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.153 41.308 71.964 90.00 104.09 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand CO2, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the effect of active-site mutation on the catalytic mechanism of carbonic anhydrase., Kim JK, Lee C, Lim SW, Andring JT, Adhikari A, McKenna R, Kim CU, IUCrJ. 2020 Sep 9;7(Pt 6):985-994. doi: 10.1107/S2052252520011008. eCollection, 2020 Nov 1. PMID:33209313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (6km6.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 6KM6
  • CSU: Contacts of Structural Units for 6KM6
  • Structure Factors (2147 Kb)
  • Retrieve 6KM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KM6 from S2C, [Save to disk]
  • View 6KM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KM6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6km6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KM6
  • Community annotation for 6KM6 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science