6KOJ Protein Transport date Aug 11, 2019
title Crystal Structure Of Snx11-Pxe Domain In Complex With Pi(3,5
authors T.Xu, J.Liu
compound source
Molecule: Sorting Nexin-11
Chain: A, B
Fragment: Px Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snx11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 1
R_factor 0.201 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.860 45.270 50.480 110.19 106.04 90.07
method X-Ray Diffractionresolution 2.14 Å
ligand I35 enzyme
Primary referenceMolecular Basis for PI(3,5)P2 Recognition by SNX11, a Protein Involved in Lysosomal Degradation and Endosome Homeostasis Regulation., Xu T, Gan Q, Wu B, Yin M, Xu J, Shu X, Liu J, J Mol Biol. 2020 Jun 16. pii: S0022-2836(20)30406-X. doi:, 10.1016/j.jmb.2020.06.010. PMID:32561432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (6koj.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (6koj.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 6KOJ
  • CSU: Contacts of Structural Units for 6KOJ
  • Structure Factors (367 Kb)
  • Retrieve 6KOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KOJ from S2C, [Save to disk]
  • View 6KOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KOJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6koj_A] [6koj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KOJ
  • Community annotation for 6KOJ at PDBWiki (http://pdbwiki.org)

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