6KSF Crystal Structure of ALKBH1 bound to 21-mer DNA bulge date
authors Li, H., Zhang, M.
compound source
symmetry
R_factor
R_Free 0.2717
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand CL, SIN, XL3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMammalian ALKBH1 serves as an N(6)-mA demethylase of unpairing DNA., Zhang M, Yang S, Nelakanti R, Zhao W, Liu G, Li Z, Liu X, Wu T, Xiao A, Li H, Cell Res. 2020 Mar;30(3):197-210. doi: 10.1038/s41422-019-0237-5. Epub 2020 Feb, 12. PMID:32051560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (6ksf.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 6KSF
  • CSU: Contacts of Structural Units for 6KSF
  • Structure Factors (493 Kb)
  • Retrieve 6KSF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KSF from S2C, [Save to disk]
  • View 6KSF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KSF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ksf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ksf_B] [6ksf_A] [6ksf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KSF
  • Community annotation for 6KSF at PDBWiki (http://pdbwiki.org)

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