6KSF	Gene Regulation	date	Aug 23, 2019
title	Crystal Structure Of Alkbh1 Bound To 21-Mer Dna Bulge
authors	H.Li, M.Zhang
compound		source
Molecule: Alpha-Ketoglutarate-Dependent Dioxygenase Alkb Ho Chain: A Fragment: Brd4-Bromo2 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Alkbh1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet
Molecule: Dna (5'- D(Dgpdcpdtpdgpdapdgpdtpdgpdcpdcpdcpdgpdcpdgp Pdtpdgpdgpdapdtpdcpdc)-3'); Chain: B Fragment: Histone H2a.Z Peptide Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'- D(Dgpdgpdapdtpdcpdcpdapdgpdcpdapdcpdgpdcpdcp Pdcpdapdgpdc)-3'); Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 41 21 2	R_factor 0.228 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.482 67.482 263.641 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CL, SIN, XL3	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Mammalian ALKBH1 serves as an N(6)-mA demethylase of unpairing DNA., Zhang M, Yang S, Nelakanti R, Zhao W, Liu G, Li Z, Liu X, Wu T, Xiao A, Li H, Cell Res. 2020 Mar;30(3):197-210. doi: 10.1038/s41422-019-0237-5. Epub 2020 Feb, 12. PMID:32051560

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (6ksf.pdb1.gz) 74 Kb LPC: Ligand-Protein Contacts for 6KSF CSU: Contacts of Structural Units for 6KSF Structure Factors (493 Kb) Retrieve 6KSF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6KSF from S2C, [Save to disk]

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Visual 3D analysis of 6KSF

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 6ksf from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ksf_B] [6ksf_A] [6ksf_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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