6KTR Immune System Protein Binding date Aug 28, 2019
title Crystal Structure Of Fibroblast Growth Factor 19 In Complex
authors H.Liu, S.Zheng, X.Hou, X.Liu, X.Lv, Y.Li, W.Li, J.Sui
compound source
Molecule: G1a8-Fab-Hc
Chain: A, F
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-F

Molecule: G1a8-Fab-Lc
Chain: B, G
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-F

Molecule: Fibroblast Growth Factor 19
Chain: C, D
Synonym: Fgf-19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf19, Unq334pro533
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.968 104.125 165.365 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand NA, SO4 enzyme
Primary referenceNovel Abs targeting the N-terminus of fibroblast growth factor 19 inhibit hepatocellular carcinoma growth without bile-acid-related side-effects., Liu H, Zheng S, Hou X, Liu X, Du K, Lv X, Li Y, Yang F, Li W, Sui J, Cancer Sci. 2020 May;111(5):1750-1760. doi: 10.1111/cas.14353. Epub 2020 Mar 20. PMID:32061104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (6ktr.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (6ktr.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 6KTR
  • CSU: Contacts of Structural Units for 6KTR
  • Structure Factors (1232 Kb)
  • Retrieve 6KTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KTR from S2C, [Save to disk]
    • View 6KTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6KTR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ktr_G] [6ktr_B] [6ktr_D] [6ktr_F] [6ktr_A] [6ktr_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6KTR
  • Community annotation for 6KTR at PDBWiki (http://pdbwiki.org)

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