6KW3 Dna Binding Protein Dna date Sep 05, 2019
title The Classa Rsc-Nucleosome Complex
authors Y.P.Ye, H.Wu, K.J.Chen, N.Verma, B.Cairns, N.Gao, Z.C.Chen
compound source
Molecule: Histone H4
Chain: B, R
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H3.2
Chain: N, Q
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: O, S
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna 167
Chain: U
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna 167
Chain: V
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Nuclear Protein Sth1nps1
Chain: W, J, Y
Synonym: Atp-Dependent Helicase Sth1,Chromatin Structure-Re Complex Protein Sth1,Snf2 Homolog;
Ec: 3.6.4.12

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Actin-Related Protein 7
Chain: f
Synonym: Actin-Like Protein Arp7,Chromatin Structure-Remode Complex Protein Arp7,Swisnf Complex Component Arp7;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Regulator Of Ty1 Transposition Protein 102
Chain: h

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Subunit Rs
Chain: F
Synonym: Nuclear Protein Localization Protein 6,Remodel The Of Chromatin Complex Subunit 7;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Protein Rs
Chain: H, D
Synonym: Remodel The Structure Of Chromatin Complex Subunit Homolog;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Subunit Rs
Chain: M
Synonym: Rsc Complex Subunit Rsc9,Remodel The Structure Of Complex Subunit 9;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Protein Rs
Chain: I
Synonym: Remodel The Structure Of Chromatin Complex Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Subunit Sf
Chain: G
Synonym: Rsc Complex Subunit Sfh1,Snf5 Homolog 1

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Protein Rs
Chain: A
Synonym: Remodel The Structure Of Chromatin Complex Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: High Temperature Lethal Protein 1
Chain: E
Synonym: Chromatin Structure-Remodeling Complex Protein Htl

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Protein Rs
Chain: C
Synonym: Remodel The Structure Of Chromatin Complex Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Protein Rs
Chain: K
Synonym: Remodel The Structure Of Chromatin Complex Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Subunit Rs
Chain: X
Synonym: Rsc Complex Subunit Rsc4,Remodel The Structure Of Complex Subunit 4;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Chromatin Structure-Remodeling Complex Subunit Rs
Chain: L
Synonym: Rsc Complex Subunit Rsc2,Remodel The Structure Of Complex Subunit 2;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Histone H4
Chain: T, P
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18028549mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Actin-Like Protein Arp9
Chain: g
Synonym: Chromatin Structure-Remodeling Complex Protein Arp Complex Component Arp9

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.13 Å
ligand ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B, R


C
  • RNA polymerase II transcript...


  • E

  • RSC-type complex
  • F


    G


    H, D


    I


    K
  • RNA polymerase II transcript...


  • L


    M


    N, Q


    S, O


    T, P


    X


    Y, J, W
  • DNA helicase activity


  • f


    g


    h

  • RSC-type complex
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (953 Kb) [Save to disk]
  • Biological Unit Coordinates (6kw3.pdb1.gz) 913 Kb
  • LPC: Ligand-Protein Contacts for 6KW3
  • CSU: Contacts of Structural Units for 6KW3
  • Retrieve 6KW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KW3 from S2C, [Save to disk]
  • View 6KW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KW3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6kw3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kw3_h] [6kw3_A] [6kw3_U] [6kw3_V] [6kw3_G] [6kw3_f] [6kw3_H] [6kw3_Y] [6kw3_E] [6kw3_W] [6kw3_P] [6kw3_F] [6kw3_K] [6kw3_J] [6kw3_M] [6kw3_X] [6kw3_B] [6kw3_D] [6kw3_Q] [6kw3_T] [6kw3_g] [6kw3_I] [6kw3_R] [6kw3_C] [6kw3_L] [6kw3_S] [6kw3_O] [6kw3_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KW3
  • Community annotation for 6KW3 at PDBWiki (http://pdbwiki.org)

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