6L4A Nuclear Protein date Oct 16, 2019
title H3-H3-H3 Tri-Nucleosome With The 22 Base-Pair Linker Dna
authors Y.Takizawa, C.H.Ho, H.Tachiwana, H.Matsunami, M.Ohi, M.Wolf, H.Ku
compound source
Molecule: Histone H3.1
Chain: A, E, K, O, S, W
Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h3a, H3fa, Hist1h3b, H3fl, Hist1h3c, H3fc, Hist1 H3fb, Hist1h3e, H3fd, Hist1h3f, H3fi, Hist1h3g, H3fh, Hist1 H3fk, Hist1h3i, H3ff, Hist1h3j, H3fj;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F, L, P, T, X
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1-Be
Chain: C, G, M, Q, U, Y
Synonym: Histone H2a.2,Histone H2aa,Histone H2am
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b Type 1-J
Chain: D, H, N, R, V, Z
Synonym: Histone H2b.1,Histone H2b.R,H2br
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2bj, H2bfr
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (485-Mer)
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (485-Mer)
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F, T, L, X, P, B


N, V, Z, H, D, R


S, K, E, A, O, W


Y, Q, M, C, G, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (645 Kb) [Save to disk]
  • Biological Unit Coordinates (6l4a.pdb1.gz) 637 Kb
  • CSU: Contacts of Structural Units for 6L4A
  • Retrieve 6L4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6L4A from S2C, [Save to disk]
  • View 6L4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6L4A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6l4a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6l4a_Y] [6l4a_G] [6l4a_U] [6l4a_Z] [6l4a_J] [6l4a_I] [6l4a_P] [6l4a_E] [6l4a_C] [6l4a_X] [6l4a_A] [6l4a_L] [6l4a_N] [6l4a_T] [6l4a_V] [6l4a_W] [6l4a_K] [6l4a_M] [6l4a_H] [6l4a_F] [6l4a_S] [6l4a_R] [6l4a_D] [6l4a_O] [6l4a_B] [6l4a_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6L4A
  • Community annotation for 6L4A at PDBWiki (http://pdbwiki.org)

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