6LMJ Dna Binding Protein Dna date Dec 25, 2019
title Asfv Pa104r In Complex With Double-Strand Dna
authors H.Wang, J.Qi, Y.Chai, F.Gao, R.Liu
compound source
Molecule: A104r
Chain: A, B
Synonym: A104r Cds Protein,Ba71v-A104r,Histone-Like Protein
Engineered: Yes
Organism_scientific: African Swine Fever Virus
Organism_common: Asfv
Organism_taxid: 10497
Gene: A104r, A104r Cds, Ba71v-A104r, Afsv47ss_0056, Asfv-Ge 058;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Tpgpcptptpaptpcpapaptptptpgptptpgpcpa)
Chain: C, D
Synonym: 20 Bp Double-Strand Dna
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.256 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.358 89.095 53.227 90.00 100.16 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural basis of African swine fever virus pA104R binding to DNA and its inhibition by stilbene derivatives., Liu R, Sun Y, Chai Y, Li S, Li S, Wang L, Su J, Yu S, Yan J, Gao F, Zhang G, Qiu HJ, Gao GF, Qi J, Wang H, Proc Natl Acad Sci U S A. 2020 May 1. pii: 1922523117. doi:, 10.1073/pnas.1922523117. PMID:32358196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (6lmj.pdb1.gz) 98 Kb
  • CSU: Contacts of Structural Units for 6LMJ
  • Structure Factors (157 Kb)
  • Retrieve 6LMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LMJ from S2C, [Save to disk]
  • View 6LMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6LMJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6lmj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lmj_B] [6lmj_D] [6lmj_A] [6lmj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6LMJ
  • Community annotation for 6LMJ at PDBWiki (http://pdbwiki.org)

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