6LR6 Rna Binding Protein date Jan 15, 2020
title The Crystal Structure Of Human Cytoplasmic Lrs
authors R.J.Liu, T.Long, H.Li, J.Li, J.H.Zhao, J.Z.Lin, A.Palencia, M.Z.Wan S.Cusack, E.D.Wang
compound source
Molecule: Leucine--Trna Ligase, Cytoplasmic
Chain: A, B
Synonym: Leucyl-Trna Synthetase,Leurs
Ec: 6.1.1.4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lars, Kiaa1352
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.211 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.854 95.798 682.388 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand A2H, LSS enzyme Ligase E.C.6.1.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • aminoacyl-tRNA editing activ...


    • Primary referenceMolecular basis of the multifaceted functions of human leucyl-tRNA synthetase in protein synthesis and beyond., Liu RJ, Long T, Li H, Zhao J, Li J, Wang M, Palencia A, Lin J, Cusack S, Wang ED, Nucleic Acids Res. 2020 Mar 30. pii: 5813801. doi: 10.1093/nar/gkaa189. PMID:32232361
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk]
  • Biological Unit Coordinates (6lr6.pdb1.gz) 165 Kb
  • Biological Unit Coordinates (6lr6.pdb2.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 6LR6
  • CSU: Contacts of Structural Units for 6LR6
  • Structure Factors (1415 Kb)
  • Retrieve 6LR6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LR6 from S2C, [Save to disk]
    • View 6LR6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LR6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lr6_B] [6lr6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LR6
  • Community annotation for 6LR6 at PDBWiki (http://pdbwiki.org)

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