6LSA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


F, C


Primary referenceCrystal structure of bovine herpesvirus 1 glycoprotein D bound to nectin-1 reveals the basis for its low-affinity binding to the receptor., Yue D, Chen Z, Yang F, Ye F, Lin S, He B, Cheng Y, Wang J, Chen Z, Lin X, Yang J, Chen H, Zhang Z, You Y, Sun H, Wen A, Wang L, Zheng Y, Cao Y, Li Y, Lu G, Sci Adv. 2020 May 13;6(20):eaba5147. doi: 10.1126/sciadv.aba5147. eCollection, 2020 May. PMID:32426511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (6lsa.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (6lsa.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6LSA
  • CSU: Contacts of Structural Units for 6LSA
  • Structure Factors (1475 Kb)
  • Retrieve 6LSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LSA from S2C, [Save to disk]
    • View 6LSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lsa_A] [6lsa_B] [6lsa_C] [6lsa_F]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science